JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRAK3_chr12_66184214_66259622	0/0	t0073	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0074	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0075	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0076	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0077	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0078	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0079	6536	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0080	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0081	6535	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0082	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0083	6535	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0084	6537	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0085	6524	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0086	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0087	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0088	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0089	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0090	6536	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0091	6536	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0092	6536	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0093	6537	1	0	1	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0094	6538	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0095	6537	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0096	6537	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0097	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0098	6538	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0099	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0100	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0101	6536	1	0	0	0	0	1	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0102	6536	1	0	0	1	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0103	6536	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0104	6537	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0105	6537	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0106	6537	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK3_chr12_66184214_66259622	0/0	t0107	6537	1	1	0	0	0	0	copy fasta	IRAK3	chr12	66184214	66259622
IRAK4_chr12_43753951_43794541	0/0	t0001	2902	110	19	18	51	6	16	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	1/0	t0002	2902	99	16	30	37	5	10	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0003	2902	33	11	4	17	0	1	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0004	2901	17	0	0	17	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0005	2902	16	0	5	7	0	4	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0006	2903	10	9	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0007	2902	8	0	0	7	0	1	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0008	2904	5	5	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0009	2904	5	1	3	0	1	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0010	2902	3	2	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0011	2902	3	0	0	3	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0012	2903	3	1	2	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/1	t0013	2904	3	0	2	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0014	2903	3	3	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0015	2902	3	3	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541