JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRAK4_chr12_43753951_43794541	0/0	t0016	2903	3	3	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0017	2903	2	0	1	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0018	2904	2	0	1	0	0	1	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0019	2903	2	2	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0020	2903	2	0	0	2	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0021	2903	2	2	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0022	2906	2	1	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0023	2902	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0024	2902	1	0	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0025	2902	1	0	0	0	0	1	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0026	2902	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0027	2902	1	0	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0028	2901	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0029	2906	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0030	2902	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0031	2902	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0032	2903	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0033	2904	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0034	2901	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0035	2902	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0036	2902	1	0	0	1	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0037	2904	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0038	2902	1	0	1	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0039	2902	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IRAK4_chr12_43753951_43794541	0/0	t0040	2902	1	1	0	0	0	0	copy fasta	IRAK4	chr12	43753951	43794541
IREB2_chr15_78433216_78506453	0/0	t0001	3432	97	10	20	50	3	14	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0002	3432	65	12	10	34	2	7	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0003	3431	59	2	12	39	2	4	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0004	3431	41	15	2	19	1	4	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/1	t0005	3429	32	1	11	7	4	8	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0006	3432	18	16	2	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0007	3431	12	0	0	12	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0008	3426	9	0	0	9	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0009	3431	8	8	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	1/0	t0010	3433	8	6	1	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0011	3439	5	2	1	2	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0012	3430	4	2	1	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0013	3431	4	0	0	3	0	1	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0014	3433	4	0	0	2	0	2	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0015	3432	4	0	0	4	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0016	3433	3	0	0	3	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0017	3430	3	0	2	0	1	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0018	3431	3	0	0	3	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0019	3432	3	0	2	0	1	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0020	3432	2	2	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0021	3432	2	0	0	2	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0022	3432	2	1	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0023	3430	2	0	1	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0024	3433	2	2	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0025	3432	2	2	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453