JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IREB2_chr15_78433216_78506453	0/0	t0026	3432	2	0	1	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0027	3432	2	0	0	2	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0028	3433	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0029	3432	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0030	3432	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0031	3431	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0032	3432	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0033	3432	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0034	3433	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0035	3431	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0036	3431	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0037	3433	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0038	3431	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0039	3431	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0040	3432	1	0	0	0	0	1	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0041	3431	1	0	0	0	0	1	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0042	3432	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0043	3431	1	0	1	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0044	3432	1	0	1	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0045	3431	1	0	0	1	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0046	3432	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0047	3432	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0048	3431	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IREB2_chr15_78433216_78506453	0/0	t0049	3434	1	1	0	0	0	0	copy fasta	IREB2	chr15	78433216	78506453
IRF1_chr5_132476609_132495773	0/0	t0001	2575	81	17	5	48	0	11	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0002	2579	57	2	8	42	1	4	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0003	2575	53	9	9	33	0	2	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/1	t0004	2574	38	3	17	4	6	7	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0005	2580	30	4	5	19	0	2	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0006	2575	20	3	10	0	6	1	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0007	2576	17	3	4	9	0	1	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0008	2576	16	4	1	9	0	2	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0009	2575	14	0	0	14	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0010	2570	10	6	4	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0011	2575	10	0	2	3	0	5	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	1/0	t0012	2577	9	8	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0013	2578	7	0	0	7	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0014	2576	6	0	0	6	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0015	2574	6	6	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0016	2573	4	2	2	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0017	2571	3	0	1	0	1	1	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0018	2581	3	1	1	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0019	2576	3	1	2	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0020	2578	2	2	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0021	2582	2	0	0	2	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0022	2580	2	2	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0023	2580	2	0	0	2	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0024	2575	2	0	0	0	0	2	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0025	2576	2	1	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0026	2574	2	1	0	0	0	1	copy fasta	IRF1	chr5	132476609	132495773