JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF1_chr5_132476609_132495773	0/0	t0027	2574	2	0	2	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0028	2579	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0029	2578	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0030	2580	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0031	2576	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0032	2575	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0033	2579	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0034	2572	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0035	2571	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0036	2575	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0037	2574	1	0	0	0	0	1	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0038	2574	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0039	2570	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0040	2579	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0041	2578	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0042	2581	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0043	2579	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0044	2579	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0045	2578	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0046	2579	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0047	2577	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0048	2574	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0049	2574	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0050	2573	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0051	2575	1	0	0	0	0	1	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0052	2575	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0053	2576	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0054	2577	1	0	0	1	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0055	2575	1	0	0	0	0	1	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0056	2574	1	0	1	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0057	2575	1	0	1	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0058	2574	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0059	2575	1	1	0	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF1_chr5_132476609_132495773	0/0	t0060	2576	1	0	1	0	0	0	copy fasta	IRF1	chr5	132476609	132495773
IRF2BP1_chr19_45878608_45891141	1/0	t0001	780	286	64	62	116	10	33	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	t0002	780	100	13	10	63	6	8	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	t0003	781	14	12	2	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/1	t0004	781	9	4	1	1	0	2	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	t0005	781	4	0	1	3	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	t0006	780	1	0	0	0	0	1	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	t0007	780	1	0	0	1	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP1_chr19_45878608_45891141	0/0	t0008	782	1	1	0	0	0	0	copy fasta	IRF2BP1	chr19	45878608	45891141
IRF2BP2_chr1_234599269_234615178	1/0	t0001	3553	154	14	32	90	1	16	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/1	t0002	3562	110	19	25	44	7	14	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0003	3563	25	23	2	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0004	3562	14	4	0	6	1	3	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0005	3562	12	0	4	0	5	3	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0006	3554	9	0	0	8	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0007	3562	7	0	0	7	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0008	3564	6	4	2	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178