JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF2BP2_chr1_234599269_234615178	0/0	t0009	3553	5	5	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0010	3562	5	0	0	5	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0011	3562	4	4	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0012	3559	4	3	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0013	3562	3	3	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0014	3555	3	0	3	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0015	3553	3	0	0	3	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0016	3563	3	1	2	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0017	3563	3	0	0	0	3	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0018	3553	2	0	0	2	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0019	3562	2	0	0	2	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0020	3549	2	0	0	1	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0021	3553	2	0	0	2	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0022	3563	2	1	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0023	3564	2	2	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0024	3553	2	0	0	2	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0025	3564	2	2	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0026	3553	2	0	0	2	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0027	3553	2	0	0	2	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0028	3553	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0029	3563	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0030	3562	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0031	3562	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0032	3566	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0033	3555	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0034	3553	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0035	3562	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0036	3562	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0037	3553	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0038	3553	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0039	3553	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0040	3558	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0041	3563	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0042	3562	1	0	0	0	1	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0043	3562	1	0	0	0	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0044	3563	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0045	3563	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0046	3563	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0047	3563	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0048	3541	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0049	3562	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0050	3562	1	0	1	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0051	3562	1	0	0	0	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0052	3562	1	0	0	0	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0053	3562	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0054	3553	1	0	0	0	0	1	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0055	3547	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0056	3555	1	0	0	1	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BP2_chr1_234599269_234615178	0/0	t0057	3563	1	1	0	0	0	0	copy fasta	IRF2BP2	chr1	234599269	234615178
IRF2BPL_chr14_77019543_77033708	0/1	t0001	1767	69	5	10	28	7	18	copy fasta	IRF2BPL	chr14	77019543	77033708