JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF2BPL_chr14_77019543_77033708	0/0	t0002	1775	37	3	12	20	0	2	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0003	1774	29	1	4	22	0	2	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0004	1767	22	0	0	22	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0005	1768	22	2	9	5	1	5	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	1/0	t0006	1776	14	1	2	8	0	2	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0007	1768	13	0	1	11	1	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0008	1777	12	3	0	9	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0009	1768	9	0	8	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0010	1767	8	0	6	1	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0011	1776	8	0	1	6	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0012	1778	8	0	1	5	0	2	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0013	1769	7	6	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0014	1777	5	2	1	2	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0015	1779	5	3	1	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0016	1771	5	2	0	3	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0017	1768	5	4	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0018	1768	5	0	0	5	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0019	1772	4	4	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0020	1777	4	0	0	3	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0021	1781	4	4	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0022	1778	4	0	0	4	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0023	1779	4	4	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0024	1781	3	0	2	0	1	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0025	1771	3	0	0	0	0	3	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0026	1771	3	3	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0027	1773	3	0	0	3	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0028	1780	3	3	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0029	1772	3	0	0	0	1	2	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0030	1775	3	0	2	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0031	1769	3	0	1	2	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0032	1779	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0033	1778	2	0	2	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0034	1776	2	0	0	0	1	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0035	1775	2	0	2	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0036	1784	2	0	2	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0037	1772	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0038	1775	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0039	1778	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0040	1762	2	0	1	0	1	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0041	1776	2	0	2	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0042	1773	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0043	1770	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0044	1776	2	2	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0045	1773	2	0	0	0	2	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0046	1772	2	1	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0047	1775	2	0	0	2	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0048	1767	2	0	0	2	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0049	1769	2	0	0	1	1	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0050	1770	2	0	2	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0051	1790	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708