JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF2BPL_chr14_77019543_77033708	0/0	t0052	1774	1	0	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0053	1765	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0054	1783	1	0	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0055	1782	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0056	1770	1	0	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0057	1773	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0058	1773	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0059	1770	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0060	1768	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0061	1767	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0062	1774	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0063	1773	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0064	1774	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0065	1772	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0066	1771	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0067	1769	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0068	1775	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0069	1773	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0070	1772	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0071	1773	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0072	1771	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0073	1770	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0074	1778	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0075	1775	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0076	1762	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0077	1759	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0078	1760	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0079	1780	1	0	0	0	0	1	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0080	1777	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0081	1774	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0082	1763	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0083	1777	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0084	1763	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0085	1786	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0086	1773	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0087	1768	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0088	1770	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0089	1777	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0090	1782	1	1	0	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0091	1767	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0092	1769	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0093	1770	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0094	1767	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0095	1777	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0096	1769	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0097	1767	1	0	1	0	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0098	1767	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2BPL_chr14_77019543_77033708	0/0	t0099	1767	1	0	0	1	0	0	copy fasta	IRF2BPL	chr14	77019543	77033708
IRF2_chr4_184382729_184479550	0/0	t0001	1203	136	38	31	41	6	20	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0002	1202	102	21	13	56	3	9	copy fasta	IRF2	chr4	184382729	184479550