JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF2_chr4_184382729_184479550	0/0	t0003	1204	81	8	18	47	3	5	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/1	t0004	1208	28	12	11	0	2	2	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0005	1193	14	0	3	10	0	1	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0006	1203	4	4	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0007	1202	3	3	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0008	1207	2	2	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0009	1203	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0010	1204	1	0	0	0	0	1	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0011	1188	1	1	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0012	1188	1	1	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	0/0	t0013	1202	1	0	0	1	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF2_chr4_184382729_184479550	1/0	t0014	1208	1	0	0	0	0	0	copy fasta	IRF2	chr4	184382729	184479550
IRF3_chr19_49654572_49670857	1/0	t0001	312	225	25	53	110	7	29	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/1	t0002	312	132	59	22	30	5	15	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0003	312	24	7	0	16	0	1	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0004	312	11	3	2	6	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0005	312	3	0	3	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0006	312	1	1	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0007	312	1	0	0	0	0	1	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0008	312	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0009	312	1	0	0	1	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF3_chr19_49654572_49670857	0/0	t0010	312	1	1	0	0	0	0	copy fasta	IRF3	chr19	49654572	49670857
IRF4_chr6_386752_416443	0/1	t0001	3955	112	3	29	57	5	17	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0002	3958	88	7	16	54	2	9	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0003	3955	69	14	3	48	2	2	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0004	3959	48	3	6	31	4	4	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0005	3955	17	16	1	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0006	3959	13	0	7	3	0	3	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0007	3955	8	8	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0008	3955	8	0	0	8	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0009	3955	5	0	0	5	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0010	3959	5	5	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	1/0	t0011	3959	5	2	2	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0012	3955	5	5	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0013	3955	4	1	2	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0014	3955	4	3	1	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0015	3954	3	0	1	2	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0016	3955	3	1	2	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0017	3958	3	3	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0018	3955	3	0	2	0	1	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0019	3955	3	0	0	3	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0020	3955	3	3	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0021	3958	2	0	1	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0022	3955	2	0	2	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0023	3959	2	0	0	2	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0024	3959	2	0	0	0	2	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0025	3955	2	0	0	2	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0026	3959	2	2	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0027	3955	2	0	2	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0028	3956	2	2	0	0	0	0	copy fasta	IRF4	chr6	386752	416443