Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD52_chr12_56232807_56263384	0/0	t0026	5451	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0027	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0028	5402	1	0	0	0	1	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0029	5451	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0030	5451	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0031	5452	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	t0032	5451	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD53_chr2_70973630_70990499	1/0	t0001	216	248	47	44	126	10	20	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/1	t0002	217	129	36	31	39	4	18	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	t0003	216	57	7	3	35	0	12	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	t0004	216	8	0	0	8	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	t0005	216	7	5	2	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	t0006	217	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD54_chr22_37825855_37849334	1/0	t0001	1185	287	58	46	140	8	34	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0002	1185	69	22	24	10	6	7	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0003	1185	6	6	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/1	t0004	1185	3	0	2	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0005	1185	3	0	0	3	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0006	1185	3	3	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0007	1185	3	3	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0008	1185	1	0	1	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0009	1185	1	1	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0010	1185	1	0	0	0	0	1	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0011	1185	1	0	1	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0012	1185	1	1	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0013	1185	1	0	0	1	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0014	1185	1	0	0	0	0	1	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0015	1185	1	0	0	0	0	1	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0016	1185	1	0	1	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	t0017	1185	1	0	1	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD55_chr5_56094680_56238330	1/1	t0001	627	230	36	50	100	11	31	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0002	627	34	30	1	0	0	3	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0003	625	21	5	7	9	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0004	627	5	4	0	0	1	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0005	627	3	2	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0006	627	3	0	3	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0007	627	3	3	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0008	625	3	3	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0009	627	1	0	0	1	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0010	627	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0011	627	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0012	627	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0013	625	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	t0014	625	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD60_chr20_58211126_58233653	0/1	t0001	2370	262	27	66	125	15	28	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0002	2370	65	18	3	43	0	1	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0003	2370	54	27	1	18	3	5	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0004	2368	37	0	0	32	0	5	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0005	2370	10	0	3	2	0	5	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0006	2370	6	5	1	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653