JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF4_chr6_386752_416443	0/0	t0029	3954	1	0	1	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0030	3954	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0031	3954	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0032	3958	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0033	3958	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0034	3959	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0035	3958	1	0	0	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0036	3955	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0037	3955	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0038	3958	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0039	3955	1	0	1	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0040	3959	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0041	3959	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0042	3959	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0043	3958	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0044	3959	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0045	3955	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0046	3955	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0047	3955	1	0	0	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0048	3955	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0049	3955	1	0	1	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0050	3955	1	0	0	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0051	3955	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0052	3955	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0053	3955	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0054	3959	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0055	3959	1	0	0	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0056	3956	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0057	3956	1	0	0	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0058	3960	1	0	0	0	0	1	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0059	3960	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0060	3956	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0061	3956	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0062	3956	1	1	0	0	0	0	copy fasta	IRF4	chr6	386752	416443
IRF4_chr6_386752_416443	0/0	t0063	3955	1	0	0	1	0	0	copy fasta	IRF4	chr6	386752	416443
IRF5_chr7_128932927_128955038	0/1	t0001	1355	181	34	31	90	6	19	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	1/0	t0002	1355	153	32	35	63	10	12	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0003	1355	25	2	1	18	0	4	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0004	1355	13	13	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0005	1355	11	0	3	1	0	7	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0006	1355	5	5	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0007	1355	2	0	2	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0008	1355	2	2	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0009	1355	2	1	1	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0010	1355	2	0	0	2	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0011	1355	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0012	1355	1	0	1	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0013	1355	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0014	1366	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0015	1355	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038