JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF5_chr7_128932927_128955038	0/0	t0016	1355	1	0	0	1	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0017	1355	1	1	0	0	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF5_chr7_128932927_128955038	0/0	t0018	1355	1	0	0	1	0	0	copy fasta	IRF5	chr7	128932927	128955038
IRF6_chr1_209780617_209811142	0/0	t0001	3075	85	14	15	34	3	19	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0002	3075	82	0	15	64	0	3	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	1/1	t0003	3075	66	10	10	34	5	5	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0004	3074	40	1	6	19	4	10	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0005	3075	35	0	9	16	4	6	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0006	3075	26	18	0	6	0	2	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0007	3074	22	18	4	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0008	3075	17	0	0	17	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0009	3074	9	0	9	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0010	3075	6	6	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0011	3075	5	5	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0012	3075	5	5	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0013	3076	4	3	1	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0014	3075	4	4	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0015	3075	3	0	0	3	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0016	3075	2	2	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0017	3075	2	0	0	2	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0018	3075	1	0	0	0	1	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0019	3075	1	0	0	0	1	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0020	3075	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0021	3075	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0022	3075	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0023	3075	1	0	0	0	0	1	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0024	3075	1	0	1	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0025	3075	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0026	3074	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0027	3075	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0028	3075	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0029	3075	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0030	3085	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0031	3075	1	0	0	1	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF6_chr1_209780617_209811142	0/0	t0032	3074	1	1	0	0	0	0	copy fasta	IRF6	chr1	209780617	209811142
IRF7_chr11_607555_620950	0/1	t0001	412	392	90	73	168	14	46	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0002	403	6	6	0	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0003	412	2	0	1	0	1	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0004	412	2	0	1	0	0	1	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0005	399	1	0	0	0	1	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0006	412	1	1	0	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0007	412	1	0	1	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0008	412	1	0	0	0	0	1	copy fasta	IRF7	chr11	607555	620950
IRF7_chr11_607555_620950	0/0	t0009	412	1	1	0	0	0	0	copy fasta	IRF7	chr11	607555	620950
IRF8_chr16_85894162_85927606	0/0	t0001	1386	103	2	20	75	0	6	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0002	1386	83	12	7	52	5	7	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	1/1	t0003	1387	55	5	9	17	6	16	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0004	1386	55	14	7	29	0	5	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0005	1386	47	17	12	14	2	2	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0006	1386	21	0	4	17	0	0	copy fasta	IRF8	chr16	85894162	85927606