JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRF8_chr16_85894162_85927606	0/0	t0007	1386	20	16	1	1	2	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0008	1386	8	3	0	4	0	1	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0009	1386	8	8	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0010	1386	6	6	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0011	1386	6	4	2	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0012	1386	6	4	2	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0013	1386	3	3	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0014	1387	2	0	1	0	0	1	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0015	1386	1	1	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0016	1387	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0017	1387	1	0	0	0	1	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0018	1386	1	1	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0019	1386	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0020	1386	1	0	0	1	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0021	1386	1	1	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0022	1386	1	1	0	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF8_chr16_85894162_85927606	0/0	t0023	1387	1	0	1	0	0	0	copy fasta	IRF8	chr16	85894162	85927606
IRF9_chr14_24156265_24171565	0/0	t0001	445	305	69	42	161	9	24	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	1/1	t0002	444	129	28	27	41	9	22	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	t0003	444	1	0	1	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	t0004	445	1	0	0	1	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	t0005	445	1	0	0	1	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRF9_chr14_24156265_24171565	0/0	t0006	445	1	1	0	0	0	0	copy fasta	IRF9	chr14	24156265	24171565
IRGC_chr19_43711076_43725021	1/1	t0001	205	296	24	61	154	16	39	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	t0002	205	89	49	7	26	2	5	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	t0003	204	17	17	0	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGC_chr19_43711076_43725021	0/0	t0004	205	10	8	2	0	0	0	copy fasta	IRGC	chr19	43711076	43725021
IRGM_chr5_150841521_150853702	1/1	t0001	1149	156	32	28	70	7	17	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0002	1161	92	21	13	48	2	8	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0003	1161	50	0	6	41	0	3	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0004	1149	34	2	19	0	3	10	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0005	1157	12	10	2	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0006	1161	8	8	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0007	1149	7	1	5	0	0	1	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0008	1162	6	0	0	5	0	1	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0009	1161	4	4	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0010	1161	3	0	0	3	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0011	1149	2	1	1	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0012	1149	2	0	0	2	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0013	1161	2	1	1	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0014	1157	2	1	1	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0015	1157	2	2	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0016	1149	1	1	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0017	1149	1	1	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0018	1149	1	0	0	1	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0019	1149	1	0	1	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0020	1149	1	1	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0021	1161	1	1	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0022	1157	1	0	1	0	0	0	copy fasta	IRGM	chr5	150841521	150853702
IRGM_chr5_150841521_150853702	0/0	t0023	1161	1	1	0	0	0	0	copy fasta	IRGM	chr5	150841521	150853702