JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRGQ_chr19_43579367_43601134	0/0	t0001	7817	52	1	9	36	0	6	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0002	7817	47	9	8	24	0	6	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	1/0	t0003	7815	42	13	4	16	3	5	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0004	7815	26	3	3	10	4	6	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/1	t0005	7817	14	0	10	0	2	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0006	7814	12	0	0	11	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0007	7815	12	1	8	3	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0008	7817	11	0	7	4	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0009	7815	10	0	3	7	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0010	7815	8	0	0	8	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0011	7814	7	6	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0012	7815	6	0	2	0	2	2	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0013	7816	6	0	0	4	1	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0014	7816	6	0	0	6	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0015	7817	6	6	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0016	7815	6	0	0	5	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0017	7815	6	1	0	4	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0018	7815	5	5	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0019	7814	5	0	0	5	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0020	7815	4	4	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0021	7817	4	2	0	2	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0022	7814	3	3	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0023	7814	3	2	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0024	7815	3	0	0	0	2	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0025	7815	3	0	0	2	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0026	7817	3	0	0	0	0	3	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0027	7815	3	0	3	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0028	7815	3	0	1	1	1	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0029	7814	2	2	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0030	7815	2	1	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0031	7815	2	2	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0032	7815	2	1	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0033	7814	2	2	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0034	7816	2	0	0	2	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0035	7816	2	2	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0036	7816	2	0	0	2	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0037	7817	2	0	0	0	1	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0038	7816	2	0	1	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0039	7817	2	0	1	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0040	7818	2	0	0	0	0	2	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0041	7818	2	0	0	2	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0042	7815	2	0	1	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0043	7815	2	0	0	2	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0044	7817	2	0	0	2	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0045	7814	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0046	7814	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0047	7814	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0048	7814	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0049	7813	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0050	7813	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134