JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRGQ_chr19_43579367_43601134	0/0	t0051	7814	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0052	7814	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0053	7814	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0054	7815	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0055	7815	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0056	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0057	7815	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0058	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0059	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0060	7815	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0061	7815	1	0	0	0	1	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0062	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0063	7814	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0064	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0065	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0066	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0067	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0068	7815	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0069	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0070	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0071	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0072	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0073	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0074	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0075	7816	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0076	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0077	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0078	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0079	7815	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0080	7816	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0081	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0082	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0083	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0084	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0085	7816	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0086	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0087	7816	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0088	7817	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0089	7817	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0090	7817	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0091	7817	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0092	7817	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0093	7818	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0094	7817	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0095	7817	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0096	7817	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0097	7817	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0098	7817	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0099	7817	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0100	7816	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134