JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRGQ_chr19_43579367_43601134	0/0	t0101	7817	1	0	0	0	1	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0102	7817	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0103	7817	1	0	1	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0104	7818	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0105	7818	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0106	7817	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0107	7817	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0108	7818	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0109	7819	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0110	7813	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0111	7815	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0112	7815	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0113	7815	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0114	7815	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0115	7815	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0116	7815	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0117	7814	1	0	0	0	0	1	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0118	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0119	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0120	7816	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0121	7817	1	0	0	1	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRGQ_chr19_43579367_43601134	0/0	t0122	7815	1	1	0	0	0	0	copy fasta	IRGQ	chr19	43579367	43601134
IRS1_chr2_226726312_226804820	1/0	t0001	6043	70	4	18	39	4	4	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0002	6032	49	1	11	35	0	2	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0003	6047	23	9	2	9	0	3	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0004	6053	16	4	1	6	0	5	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0005	6041	15	6	3	5	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0006	6049	6	3	0	2	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0007	6045	5	1	0	2	1	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0008	6055	4	4	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0009	6039	4	3	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0010	6045	4	0	3	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0011	6043	4	0	0	4	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0012	6053	3	2	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0013	6055	3	2	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0014	6047	3	3	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0015	6054	3	3	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0016	6041	3	0	0	0	1	2	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0017	6052	2	1	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0018	6038	2	0	0	2	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0019	6052	2	2	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0020	6044	2	1	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0021	6046	2	2	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0022	6043	2	0	2	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0023	6046	2	0	0	2	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0024	6032	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0025	6049	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0026	6045	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0027	6050	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0028	6054	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820