JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRS1_chr2_226726312_226804820	0/0	t0029	6049	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0030	6049	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0031	6051	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0032	6048	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0033	6038	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0034	6040	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0035	6038	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0036	6044	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0037	6039	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0038	6039	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0039	6041	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0040	6044	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0041	6042	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0042	6046	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0043	6056	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0044	6052	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0045	6054	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0046	6046	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0047	6046	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0048	6048	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0049	6037	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0050	6033	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0051	6047	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0052	6049	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0053	6051	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0054	6043	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0055	6045	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0056	6045	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/1	t0057	6047	1	0	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0058	6047	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0059	6047	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0060	6045	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0061	6043	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0062	6043	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0063	6047	1	0	0	0	0	1	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0064	6043	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0065	6032	1	0	0	0	1	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0066	6032	1	1	0	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0067	6030	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0068	6034	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0069	6030	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0070	6032	1	0	0	1	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0071	6045	1	0	0	0	1	0	copy fasta	IRS1	chr2	226726312	226804820
IRS1_chr2_226726312_226804820	0/0	t0072	6043	1	0	1	0	0	0	copy fasta	IRS1	chr2	226726312	226804820
IRS2_chr13_109747695_109791583	0/0	t0001	4145	98	5	19	55	5	14	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	t0002	4145	97	12	18	43	6	18	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	1/1	t0003	4140	58	15	3	31	1	6	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	t0004	4145	12	0	0	12	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	t0005	4140	12	0	0	12	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	t0006	4145	9	8	1	0	0	0	copy fasta	IRS2	chr13	109747695	109791583