JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRS4_chrX_108714946_108741563	0/0	t0008	2793	1	0	1	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0009	2793	1	1	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0010	2793	1	1	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0011	2793	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0012	2793	1	0	0	0	1	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0013	2793	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0014	2793	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	t0015	2792	1	0	1	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRX1_chr5_3590832_3606403	1/0	t0001	638	229	51	26	123	5	23	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0002	638	217	41	58	83	11	24	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0003	638	2	2	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0004	638	2	1	1	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0005	638	2	0	0	2	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/1	t0006	638	1	0	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0007	638	1	1	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0008	638	1	0	0	0	0	1	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	t0009	638	1	0	1	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX2_chr5_2741165_2756677	1/0	t0001	1664	107	13	21	64	1	7	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0002	1665	73	15	18	24	6	10	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0003	1665	59	12	11	31	0	5	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0004	1665	41	7	4	22	3	5	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0005	1666	28	1	5	8	3	11	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0006	1664	20	0	1	18	0	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0007	1664	13	12	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0008	1664	10	1	7	1	0	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0009	1666	8	1	0	2	0	5	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0010	1663	7	3	1	2	1	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0011	1664	7	1	2	3	0	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0012	1665	7	7	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0013	1665	6	0	0	6	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0014	1665	5	1	1	0	2	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0015	1667	3	3	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0016	1666	3	2	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0017	1663	3	2	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0018	1665	3	1	2	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0019	1665	3	0	0	3	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0020	1664	3	0	0	3	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0021	1664	2	2	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0022	1664	2	1	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0023	1663	2	0	0	2	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0024	1666	2	0	0	0	0	2	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0025	1665	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0026	1664	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0027	1666	1	0	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0028	1664	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0029	1664	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0030	1664	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0031	1663	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0032	1665	1	0	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0033	1665	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677