JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRX2_chr5_2741165_2756677	0/0	t0034	1665	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0035	1668	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0036	1668	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0037	1665	1	0	0	0	0	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0038	1664	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0039	1666	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/1	t0040	1668	1	0	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0041	1666	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0042	1664	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	t0043	1663	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX3_chr16_54278304_54291787	0/1	t0001	1120	167	34	32	74	7	19	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0002	1120	133	15	22	73	3	20	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0003	1108	38	2	15	12	6	3	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	1/0	t0004	1120	16	15	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0005	1120	10	10	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0006	1120	3	3	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0007	1120	3	2	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0008	1120	3	3	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0009	1120	3	3	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0010	1120	2	2	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0011	1120	2	2	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0012	1120	1	1	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0013	1120	1	1	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0014	1120	1	1	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0015	1120	1	1	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0016	1120	1	0	0	0	0	1	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0017	1120	1	0	0	1	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0018	1120	1	1	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	t0019	1120	1	0	0	0	0	1	copy fasta	IRX3	chr16	54278304	54291787
IRX4_chr5_1872413_1887925	1/0	t0001	835	148	38	29	63	6	11	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0002	835	123	23	24	60	3	13	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0003	833	80	6	2	58	2	12	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0004	835	49	20	13	3	6	7	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/1	t0005	835	8	1	5	0	1	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0006	835	5	4	0	0	0	1	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0007	835	4	0	0	4	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0008	835	4	0	0	4	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0009	835	3	3	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0010	835	3	2	1	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0011	835	1	0	1	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0012	833	1	0	0	0	0	1	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0013	833	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0014	835	1	0	1	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0015	833	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0016	835	1	0	0	0	0	1	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0017	835	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0018	835	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	t0019	835	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX5_chr16_54925865_54939485	0/1	t0001	947	313	54	64	151	11	32	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0002	947	46	23	3	8	1	11	copy fasta	IRX5	chr16	54925865	54939485