Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD60_chr20_58211126_58233653	0/0	t0007	2370	5	5	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0008	2370	4	3	1	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0009	2370	2	2	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0010	2370	2	2	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0011	2370	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0012	2370	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0013	2370	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0014	2370	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0015	2370	1	0	1	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0016	2370	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0017	2370	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0018	2370	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0019	2370	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	t0020	2370	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	1/0	t0021	2370	1	0	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD61_chr7_6026376_6041552	1/1	t0001	167	446	98	78	206	16	46	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD62_chr18_12088843_12134764	0/0	t0001	2000	93	2	12	72	2	5	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0002	1998	70	8	18	30	1	13	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/1	t0003	1995	67	21	10	19	5	11	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	1/0	t0004	2001	44	0	11	24	3	5	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0005	2000	11	11	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0006	1996	9	0	2	7	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0007	2001	8	0	2	6	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0008	2002	8	5	2	0	1	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0009	2002	7	5	1	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0010	1999	6	6	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0011	2001	6	5	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0012	1998	5	4	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0013	1995	5	0	2	3	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0014	2001	4	4	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0015	2002	4	0	1	2	0	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0016	1997	4	3	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0017	2001	3	3	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0018	1998	3	3	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0019	1997	3	3	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0020	1998	3	0	0	3	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0021	1997	3	3	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0022	1998	3	1	0	1	0	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0023	2001	2	0	0	0	1	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0024	1999	2	0	0	1	0	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0025	2001	2	0	0	2	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0026	2002	2	2	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0027	2001	1	0	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0028	2000	1	1	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0029	2001	1	1	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0030	2000	1	0	0	0	0	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0031	2001	1	0	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0032	1997	1	1	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0033	1998	1	0	0	0	0	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	t0034	1999	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764