JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IRX5_chr16_54925865_54939485	0/0	t0003	947	14	13	0	1	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	1/0	t0004	947	11	0	6	2	1	1	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0005	947	1	0	0	1	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0006	947	1	0	1	0	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0007	947	1	0	0	1	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0008	947	1	0	0	0	1	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0009	947	1	0	0	1	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	t0010	947	1	0	0	1	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX6_chr16_55319203_55335756	1/0	t0001	1341	210	49	41	91	7	21	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/1	t0002	1341	149	21	31	74	5	17	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0003	1341	21	2	1	18	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0004	1341	20	0	6	10	0	4	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0005	1341	10	6	0	0	2	2	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0006	1341	8	8	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0007	1341	7	7	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0008	1341	7	0	0	5	0	2	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0009	1341	4	0	0	2	0	2	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0010	1341	2	0	0	0	2	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0011	1341	2	0	0	2	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0012	1341	1	0	1	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0013	1341	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0014	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0015	1329	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0016	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0017	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0018	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	t0019	1329	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
ISCA1_chr9_86259546_86287538	0/0	t0001	1578	179	35	29	85	8	22	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0002	1578	167	44	24	81	2	16	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	1/0	t0003	1578	33	1	17	2	8	4	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0004	1578	10	0	0	10	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0005	1577	6	6	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0006	1578	2	2	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0007	1578	2	2	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0008	1578	2	0	0	2	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0009	1578	2	0	0	2	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0010	1578	1	0	0	1	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0011	1578	1	0	0	1	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/1	t0012	1578	1	0	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0013	1578	1	1	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0014	1577	1	0	0	1	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0015	1578	1	1	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	t0016	1578	1	0	0	1	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA2_chr14_74488765_74502106	1/1	t0001	2117	177	24	19	114	9	9	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0002	2117	133	24	34	48	8	19	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0003	2121	42	13	6	17	0	6	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0004	2121	39	1	14	18	1	5	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0005	2117	7	7	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0006	2117	7	6	0	1	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0007	2117	7	4	3	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106