JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ISCA2_chr14_74488765_74502106	0/0	t0008	2117	4	4	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0009	2117	3	3	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0010	2117	2	2	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0011	2117	2	2	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0012	2117	2	2	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0013	2121	1	0	1	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0014	2117	1	0	1	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0015	2117	1	1	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0016	2117	1	1	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0017	2117	1	0	0	0	0	1	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0018	2117	1	1	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	t0019	2117	1	1	0	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCU_chr12_108557596_108574368	0/1	t0001	481	365	62	55	191	12	44	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	1/0	t0002	480	47	16	9	17	2	2	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0003	481	19	17	2	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0004	481	6	0	3	1	0	2	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0005	481	4	0	0	4	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0006	481	2	2	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0007	481	1	0	0	1	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0008	481	1	1	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	t0009	481	1	0	1	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISG15_chr1_1008497_1019540	0/1	t0001	140	333	64	62	146	17	43	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	1/0	t0002	140	39	28	7	0	1	2	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	t0003	140	9	4	1	4	0	0	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	t0004	140	1	0	0	0	0	1	copy fasta	ISG15	chr1	1008497	1019540
ISG20L2_chr1_156716895_156733766	0/0	t0001	1924	127	18	9	73	7	20	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0002	1925	82	27	27	23	0	5	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0003	1924	67	8	12	32	2	13	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0004	1923	50	9	19	14	3	5	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0005	1923	7	2	2	1	1	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/1	t0006	1924	6	1	1	0	2	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0007	1924	6	0	0	6	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0008	1924	5	4	1	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0009	1924	4	0	3	0	1	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0010	1926	4	1	0	2	0	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0011	1923	4	3	0	1	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0012	1924	4	0	2	0	2	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0013	1925	4	4	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0014	1923	3	0	3	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0015	1924	3	0	0	3	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0016	1924	3	0	0	3	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0017	1924	3	3	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0018	1923	2	0	0	0	0	2	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0019	1924	2	2	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0020	1925	2	0	0	2	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0021	1924	2	1	1	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0022	1924	2	2	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0023	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0024	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0025	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766