JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ISG20L2_chr1_156716895_156733766	1/0	t0026	1924	1	0	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0027	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0028	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0029	1925	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0030	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0031	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0032	1922	1	0	0	0	0	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0033	1924	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	t0034	1907	1	0	0	0	0	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20_chr15_88634016_88661483	0/0	t0001	1038	174	21	21	104	5	23	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/1	t0002	1038	126	35	30	48	5	7	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	1/0	t0003	1038	88	17	16	43	3	8	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0004	1038	19	3	5	6	3	2	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0005	1037	12	11	1	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0006	1038	4	3	1	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0007	1038	3	3	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0008	1038	3	0	0	0	0	3	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0009	1038	2	2	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0010	1038	2	0	0	1	0	1	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0011	1037	1	1	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0012	1038	1	0	0	1	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	t0013	1064	1	0	0	1	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISL1_chr5_51378448_51399730	1/1	t0001	1345	180	17	34	97	11	19	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0002	1347	122	46	24	41	2	9	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0003	1346	20	14	3	1	1	1	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0004	1347	3	3	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0005	1346	3	3	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0006	1346	2	0	1	1	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0007	1345	2	1	0	1	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0008	1345	2	1	1	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0009	1347	2	0	1	0	0	1	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0010	1347	1	1	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0011	1345	1	1	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0012	1345	1	0	0	1	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0013	1345	1	0	0	1	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0014	1345	1	1	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	t0015	1347	1	0	0	1	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL2_chr15_76331773_76347475	1/1	t0001	752	247	86	47	81	8	23	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	t0002	752	162	8	32	99	4	19	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	t0003	752	3	2	1	0	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	t0004	752	3	3	0	0	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	t0005	752	1	1	0	0	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISLR2_chr15_74125586_74141802	1/1	t0001	1965	357	61	63	179	10	42	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0002	1965	14	14	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0003	1965	7	7	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0004	1965	4	4	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0005	1965	4	0	0	0	0	4	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0006	1965	2	1	1	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0007	1965	2	2	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0008	1965	2	0	0	2	0	0	copy fasta	ISLR2	chr15	74125586	74141802