JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ISLR2_chr15_74125586_74141802	0/0	t0009	1965	2	2	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0010	1965	1	1	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0011	1965	1	1	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0012	1965	1	1	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	t0013	1965	1	0	0	1	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR_chr15_74168710_74181871	1/1	t0001	1045	371	53	60	200	15	41	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0002	1045	17	13	4	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0003	1045	14	2	8	0	2	2	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0004	1045	12	11	1	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0005	1045	6	5	1	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0006	1045	4	4	0	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0007	1045	3	1	2	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0008	1045	2	2	0	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0009	1045	1	0	0	0	0	1	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0010	1045	1	0	1	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0011	1045	1	1	0	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0012	1045	1	0	1	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	t0013	1045	1	0	0	0	1	0	copy fasta	ISLR	chr15	74168710	74181871
ISM1_chr20_13216274_13305651	1/0	t0001	1696	210	41	36	102	8	22	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0002	1696	49	2	8	37	1	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0003	1696	35	6	2	27	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0004	1701	23	4	11	3	3	2	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0005	1696	10	2	1	7	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0006	1696	9	7	1	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0007	1696	9	2	3	0	1	3	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0008	1696	8	7	0	0	1	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/1	t0009	1701	4	0	1	2	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0010	1696	4	4	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0011	1699	2	2	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0012	1696	2	0	1	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0013	1696	2	2	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0014	1696	2	0	0	2	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0015	1696	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0016	1701	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0017	1701	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0018	1696	1	0	0	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0019	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0020	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0021	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0022	1696	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0023	1696	1	0	0	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0024	1696	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0025	1696	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0026	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0027	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0028	1696	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0029	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0030	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0031	1741	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0032	1696	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651