JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ISM1_chr20_13216274_13305651	0/0	t0033	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0034	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0035	1696	1	0	0	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0036	1696	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0037	1696	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0038	1699	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0039	1696	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0040	1696	1	0	0	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	t0041	1699	1	0	1	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM2_chr14_77469394_77503816	0/1	t0001	1235	210	49	57	60	12	31	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0002	1224	26	9	5	2	2	8	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	1/0	t0003	1225	20	18	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0004	1235	5	4	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0005	1224	3	2	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0006	1235	3	3	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0007	1235	2	0	0	2	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0008	1235	2	2	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0009	1224	1	0	0	0	0	1	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0010	1224	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0011	1235	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0012	1235	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0013	1235	1	0	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0014	1235	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0015	1235	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0016	1235	1	0	0	1	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	t0017	1235	1	0	0	1	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISOC1_chr5_129089749_129119028	0/0	t0001	1046	294	58	49	155	11	21	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	1/0	t0002	1046	70	7	21	25	5	11	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/1	t0003	1046	30	20	3	1	2	3	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	t0004	1046	12	5	0	6	0	1	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	t0005	1046	5	4	1	0	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	t0006	1046	4	4	0	0	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	t0007	1046	1	0	0	0	0	1	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	t0008	1046	1	0	0	0	0	1	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	t0009	1046	1	0	0	1	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC2_chr19_55447985_55466642	0/1	t0001	458	172	47	39	56	4	25	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0002	459	101	7	16	69	3	6	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0003	459	48	11	16	3	6	12	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0004	458	17	8	2	3	3	1	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	1/0	t0005	458	16	3	1	11	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0006	458	15	13	1	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0007	458	3	3	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0008	458	2	0	0	0	0	2	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0009	458	2	0	0	0	2	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0010	458	1	1	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0011	458	1	0	0	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0012	458	1	1	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	t0013	459	1	0	1	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
IST1_chr16_71890531_71936199	1/0	t0001	3461	129	24	29	58	5	12	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0002	3455	82	4	9	49	4	16	copy fasta	IST1	chr16	71890531	71936199