JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IST1_chr16_71890531_71936199	0/0	t0003	3461	38	36	2	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0004	3461	22	0	13	4	1	4	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0005	3461	20	1	7	6	2	4	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0006	3453	11	11	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/1	t0007	3461	10	2	4	0	1	2	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0008	3461	9	0	0	8	0	1	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0009	3461	4	0	4	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0010	3461	3	0	1	0	2	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0011	3461	3	2	0	0	1	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0012	3461	2	2	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0013	3461	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0014	3461	1	0	1	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0015	3461	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0016	3455	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0017	3455	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0018	3455	1	0	0	0	0	1	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0019	3461	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0020	3461	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0021	3461	1	0	0	0	0	1	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0022	3461	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0023	3461	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0024	3461	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0025	3461	1	0	0	0	0	1	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0026	3461	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0027	3453	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0028	3461	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0029	3461	1	0	1	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0030	3461	1	0	1	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	t0031	3455	1	0	0	1	0	0	copy fasta	IST1	chr16	71890531	71936199
ISX_chr22_35061158_35092387	0/0	t0001	2336	122	12	18	71	5	16	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/1	t0002	2336	122	32	24	54	6	5	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0003	2336	81	30	21	26	0	4	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0004	2336	49	0	0	42	0	7	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0005	2336	13	2	4	1	2	4	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0006	2336	10	2	4	0	1	3	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	1/0	t0007	2336	3	1	0	0	0	1	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0008	2336	2	2	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0009	2336	1	0	0	1	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0010	2336	1	0	1	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0011	2336	1	0	0	1	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0012	2336	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0013	2336	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0014	2336	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0015	2336	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	t0016	2336	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISY1_chr3_129122415_129166063	0/1	t0001	2755	152	9	37	70	10	25	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	1/0	t0002	2755	114	52	24	26	2	9	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0003	2754	19	3	0	13	0	3	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0004	2756	11	6	3	2	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0005	2755	9	0	0	7	0	2	copy fasta	ISY1	chr3	129122415	129166063