JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ISY1_chr3_129122415_129166063	0/0	t0006	2756	8	1	1	2	0	4	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0007	2747	8	0	0	8	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0008	2754	5	0	0	5	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0009	2755	5	0	0	5	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0010	2755	5	0	0	5	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0011	2755	4	0	3	0	1	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0012	2755	3	3	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0013	2754	2	0	0	0	0	2	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0014	2754	2	1	1	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0015	2754	2	2	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0016	2755	1	0	0	1	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0017	2756	1	0	0	0	0	1	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0018	2755	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0019	2755	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0020	2755	1	0	0	1	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0021	2755	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0022	2767	1	0	0	1	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0023	2755	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0024	2755	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0025	2755	1	0	0	0	1	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0026	2755	1	0	0	0	0	1	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0027	2755	1	0	0	0	0	1	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0028	2755	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0029	2756	1	0	0	1	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0030	2755	1	0	0	1	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0031	2754	1	1	0	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISY1_chr3_129122415_129166063	0/0	t0032	2755	1	0	1	0	0	0	copy fasta	ISY1	chr3	129122415	129166063
ISYNA1_chr19_18429388_18443133	0/0	t0001	576	148	68	30	29	7	14	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	1/1	t0002	576	133	14	37	58	6	16	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	t0003	576	9	9	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	t0004	576	8	3	2	0	1	2	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	t0005	576	6	4	2	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	t0006	576	2	2	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	t0007	576	1	0	1	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	t0008	597	1	0	0	1	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ITCH_chr20_34358273_34516773	0/0	t0001	4156	101	22	15	47	4	13	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0002	4154	93	22	9	51	3	8	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/1	t0003	4157	29	8	8	10	0	2	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0004	4155	17	5	1	10	1	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0005	4155	10	1	1	6	1	1	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0006	4153	5	3	0	0	0	2	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0007	4154	4	2	1	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0008	4156	4	1	0	3	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0009	4154	3	3	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0010	4154	3	0	2	0	0	1	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0011	4156	2	0	0	2	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0012	4157	2	2	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0013	4156	2	0	0	2	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0014	4155	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0015	4155	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773