JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITCH_chr20_34358273_34516773	0/0	t0016	4155	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0017	4154	1	0	1	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0018	4156	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0019	4156	1	0	0	0	0	1	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0020	4155	1	0	1	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0021	4155	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0022	4156	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0023	4154	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0024	4154	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0025	4156	1	0	0	0	1	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0026	4153	1	0	0	0	0	1	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0027	4154	1	0	0	0	0	1	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0028	4154	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0029	4155	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	1/0	t0030	4155	1	0	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0031	4156	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	t0032	4154	1	0	1	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITFG1_chr16_47149391_47466063	1/1	t0001	1347	82	47	15	4	4	10	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	t0002	1347	18	13	5	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	t0003	1347	7	7	0	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	t0004	1344	3	3	0	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG2_chr12_2807668_2830076	1/1	t0001	977	378	81	57	187	10	41	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0002	975	10	9	1	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0003	977	3	0	1	0	2	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0004	977	3	0	3	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0005	977	1	0	1	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0006	977	1	1	0	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0007	977	1	1	0	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0008	977	1	1	0	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0009	977	1	0	0	0	0	1	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0010	977	1	0	1	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0011	977	1	1	0	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	t0012	977	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITGA10_chr1_145886208_145915050	1/0	t0001	1627	320	73	65	142	9	30	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/1	t0002	1627	27	3	10	7	0	6	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0003	1627	24	7	1	15	0	1	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0004	1627	7	0	0	7	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0005	1627	5	5	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0006	1627	3	0	0	0	0	3	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0007	1627	2	0	1	0	1	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0008	1627	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	t0009	1627	1	0	1	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA11_chr15_68291532_68437163	0/1	t0001	6594	16	4	6	0	4	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0002	6628	12	1	2	6	0	3	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0003	6630	11	0	5	5	1	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0004	6626	10	1	2	4	0	3	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0005	6638	7	0	2	5	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0006	6636	7	0	1	2	0	4	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0007	6632	7	0	0	6	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0008	6594	6	1	4	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163