JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA11_chr15_68291532_68437163	0/0	t0009	6634	5	1	0	2	0	2	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0010	6594	5	2	1	0	0	2	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0011	6640	4	0	0	3	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0012	6633	4	3	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0013	6631	4	1	0	1	0	2	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0014	6624	4	0	0	3	1	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0015	6590	4	4	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0016	6589	3	3	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0017	6636	3	3	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0018	6635	3	0	1	1	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0019	6629	3	0	2	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0020	6627	3	2	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0021	6625	3	3	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0022	6625	3	1	1	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0023	6620	3	0	0	1	1	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0024	6619	3	0	2	0	1	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0025	6588	3	3	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0026	6638	2	0	0	2	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0027	6642	2	0	0	2	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0028	6630	2	0	2	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0029	6627	2	2	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0030	6622	2	0	0	0	1	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0031	6615	2	0	2	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0032	6615	2	0	0	1	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0033	6605	2	0	2	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0034	6588	2	1	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0035	6633	2	2	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0036	6626	2	0	2	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0037	6620	2	0	2	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0038	6630	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0039	6636	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0040	6628	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0041	6601	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0042	6597	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0043	6593	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0044	6593	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0045	6593	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0046	6593	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0047	6645	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0048	6639	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0049	6637	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0050	6650	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0051	6648	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0052	6646	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0053	6644	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0054	6644	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0055	6643	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0056	6644	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0057	6642	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0058	6640	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163