JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA11_chr15_68291532_68437163	0/0	t0109	6637	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0110	6635	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0111	6632	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0112	6631	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0113	6630	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0114	6628	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0115	6627	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	1/0	t0116	6625	1	0	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0117	6625	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0118	6624	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	t0119	6621	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA1_chr5_52782916_52964209	0/0	t0001	7193	32	0	8	14	1	9	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0002	7183	25	10	1	13	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0003	7175	24	1	4	14	4	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0004	7189	23	6	7	4	2	4	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0005	7197	18	5	4	8	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0006	7193	17	7	0	4	2	4	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0007	7197	13	0	0	10	0	3	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/1	t0008	7175	9	0	1	7	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0009	7189	9	2	1	5	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0010	7197	7	0	1	5	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0011	7197	6	0	1	2	1	2	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0012	7193	6	0	1	2	1	2	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	1/0	t0013	7197	5	0	0	4	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0014	7175	5	0	0	5	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0015	7193	4	3	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0016	7191	4	4	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0017	7199	4	0	0	4	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0018	7201	4	3	0	0	1	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0019	7185	4	0	0	4	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0020	7191	3	3	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0021	7199	3	0	0	3	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0022	7193	3	0	1	0	0	2	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0023	7183	3	1	2	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0024	7199	3	0	1	0	2	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0025	7185	3	2	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0026	7183	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0027	7188	2	1	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0028	7193	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0029	7175	2	0	0	2	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0030	7187	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0031	7190	2	0	0	2	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0032	7195	2	1	1	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0033	7193	2	0	0	1	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0034	7183	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0035	7173	2	0	0	2	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0036	7184	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0037	7191	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0038	7187	2	0	2	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0039	7193	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209