JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA1_chr5_52782916_52964209	0/0	t0090	7197	1	0	1	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0091	7197	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0092	7191	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0093	7195	1	0	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0094	7189	1	0	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0095	7189	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0096	7181	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	t0097	7197	1	0	1	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA2B_chr17_44367181_44394649	1/1	t0001	360	346	86	66	138	12	42	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	t0002	360	2	1	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	t0003	360	2	0	0	2	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	t0004	360	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	t0005	360	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	t0006	359	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	t0007	360	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2_chr5_52984352_53099779	1/0	t0001	4298	76	15	10	45	1	4	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0002	4313	52	6	15	19	4	8	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0003	4331	52	1	6	39	2	4	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0004	4334	35	12	5	11	1	6	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0005	4298	30	3	10	9	2	6	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0006	4333	26	3	5	18	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0007	4312	23	7	4	8	3	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0008	4313	21	20	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0009	4332	6	0	0	5	1	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0010	4312	5	5	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0011	4331	5	0	5	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0012	4312	3	3	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0013	4297	3	0	0	3	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0014	4295	3	0	0	3	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0015	4313	3	0	0	3	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0016	4308	3	0	0	3	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0017	4307	3	1	2	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0018	4329	3	0	2	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0019	4335	3	0	2	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0020	4312	2	0	2	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0021	4312	2	2	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0022	4294	2	0	0	2	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0023	4313	2	0	0	2	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0024	4298	2	0	2	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0025	4313	2	2	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0026	4307	2	2	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0027	4331	2	0	0	2	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/1	t0028	4331	2	0	0	0	1	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0029	4313	1	0	0	0	1	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0030	4312	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0031	4313	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0032	4298	1	0	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0033	4298	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0034	4298	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0035	4297	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779