JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA2_chr5_52984352_53099779	0/0	t0036	4298	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0037	4313	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0038	4313	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0039	4313	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0040	4312	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0041	4329	1	0	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0042	4329	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0043	4331	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0044	4335	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0045	4330	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0046	4330	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0047	4334	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0048	4334	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0049	4334	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0050	4334	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0051	4298	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0052	4313	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	t0053	4313	1	0	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA3_chr17_50051110_50095481	0/0	t0001	1734	151	40	30	54	12	15	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	1/0	t0002	1734	86	9	15	52	0	9	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0003	1734	86	1	9	60	1	15	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/1	t0004	1734	36	12	14	1	5	3	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0005	1734	7	7	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0006	1734	7	6	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0007	1734	6	0	0	0	0	6	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0008	1731	2	2	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0009	1734	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0010	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0011	1734	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0012	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0013	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0014	1734	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0015	1733	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0016	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0017	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0018	1734	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0019	1734	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0020	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0021	1734	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0022	1732	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0023	1734	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0024	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0025	1734	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0026	1732	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0027	1734	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0028	1734	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	t0029	1734	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA4_chr2_181452386_181543940	0/1	t0001	3687	80	29	14	28	1	7	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0002	3687	74	15	12	34	4	9	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0003	3682	49	2	15	31	0	1	copy fasta	ITGA4	chr2	181452386	181543940