JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA4_chr2_181452386_181543940	0/0	t0004	3689	30	3	8	14	2	3	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0005	3689	23	4	2	15	1	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0006	3687	17	1	1	14	0	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0007	3687	7	0	1	5	0	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0008	3669	6	6	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0009	3682	5	0	1	4	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0010	3687	4	0	0	4	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0011	3689	4	0	1	3	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0012	3682	4	4	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0013	3695	4	0	0	4	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0014	3682	3	3	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0015	3687	3	0	0	3	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0016	3687	3	3	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0017	3683	3	3	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0018	3659	3	0	0	3	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0019	3726	2	0	1	0	1	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0020	3687	2	0	0	2	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0021	3687	2	2	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0022	3682	2	0	0	0	2	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0023	3673	2	0	2	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0024	3687	2	0	0	2	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0025	3689	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0026	3659	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0027	3689	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0028	3682	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0029	3695	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0030	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0031	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0032	3683	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0033	3724	1	0	0	0	0	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0034	3671	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0035	3683	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0036	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0037	3687	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0038	3687	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0039	3687	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0040	3687	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0041	3699	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0042	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0043	3689	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0044	3677	1	0	0	0	1	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0045	3689	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0046	3689	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0047	3682	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0048	3682	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0049	3683	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0050	3669	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0051	3669	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0052	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0053	3683	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940