JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA4_chr2_181452386_181543940	1/0	t0054	3683	1	0	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0055	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0056	3689	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0057	3683	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	t0058	3687	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA5_chr12_54390261_54424266	1/1	t0001	1101	291	76	69	97	12	35	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0002	1101	14	0	0	14	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0003	1093	14	6	0	1	0	7	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0004	1101	7	7	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0005	1101	1	0	1	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0006	1101	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0007	1101	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	t0008	1101	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA6_chr2_172422586_172511459	1/1	t0001	2411	93	28	27	17	6	13	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0002	2411	91	14	17	50	3	7	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0003	2412	30	6	6	7	4	7	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0004	2411	26	0	3	19	1	3	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0005	2412	21	0	2	16	0	3	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0006	2412	13	0	0	13	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0007	2411	11	11	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0008	2411	9	0	3	6	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0009	2411	9	9	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0010	2413	7	7	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0011	2411	5	1	2	0	0	2	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0012	2406	3	0	2	0	0	1	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0013	2411	3	3	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0014	2411	2	0	2	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0015	2411	2	0	1	1	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0016	2411	2	0	0	2	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0017	2412	2	2	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0018	2411	2	0	0	2	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0019	2411	2	1	1	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0020	2411	2	0	0	0	0	2	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0021	2412	1	0	0	1	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0022	2411	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0023	2411	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0024	2411	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0025	2411	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0026	2421	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0027	2411	1	0	1	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0028	2366	1	0	0	1	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0029	2411	1	0	0	0	0	1	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0030	2411	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0031	2411	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0032	2411	1	0	1	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0033	2412	1	0	0	0	0	1	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0034	2412	1	0	0	1	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0035	2454	1	0	1	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0036	2412	1	0	1	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	t0037	2412	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459