JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA7_chr12_55679568_55712904	1/1	t0001	713	322	93	68	112	13	34	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	t0002	713	4	0	2	0	2	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	t0003	713	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	t0004	713	1	0	0	0	1	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	t0005	713	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	t0006	713	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA8_chr10_15508954_15724922	0/1	t0001	3354	42	8	15	11	3	4	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0002	3356	26	16	7	0	1	2	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0003	3356	25	13	0	12	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0004	3356	19	0	6	8	0	5	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	1/0	t0005	3356	19	5	2	9	0	2	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0006	3351	10	1	2	5	0	2	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0007	3353	9	0	1	8	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0008	3356	7	7	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0009	3356	6	6	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0010	3357	4	4	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0011	3356	4	4	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0012	3353	3	0	1	0	0	2	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0013	3353	3	0	0	3	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0014	3353	3	1	0	1	0	1	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0015	3356	3	2	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0016	3354	3	0	0	3	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0017	3357	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0018	3351	2	0	0	2	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0019	3356	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0020	3354	2	0	0	2	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0021	3354	2	0	2	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0022	3356	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0023	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0024	3357	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0025	3351	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0026	3352	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0027	3353	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0028	3353	1	0	0	0	1	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0029	3355	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0030	3354	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0031	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0032	3356	1	0	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0033	3355	1	0	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0034	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0035	3356	1	0	0	0	1	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0036	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0037	3355	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0038	3354	1	0	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0039	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0040	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0041	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0042	3355	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0043	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	t0044	3356	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922