JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGA9_chr3_37447141_37828507	0/0	t0001	4753	26	3	9	11	0	3	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/1	t0002	4753	25	11	9	0	2	2	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0003	4753	23	10	3	8	0	2	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0004	4751	22	4	0	16	0	2	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0005	4753	13	9	3	0	1	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	1/0	t0006	4753	12	2	1	7	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0007	4753	8	6	2	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0008	4753	5	4	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0009	4753	4	4	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0010	4755	4	4	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0011	4753	2	2	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0012	4753	2	2	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0013	4753	2	0	1	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0014	4753	2	1	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0015	4751	2	1	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0016	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0017	4753	1	0	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0018	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0019	4753	1	0	0	1	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0020	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0021	4753	1	0	0	1	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0022	4753	1	0	0	0	1	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0023	4753	1	0	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0024	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0025	4753	1	0	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0026	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0027	4753	1	0	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0028	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0029	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0030	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	t0031	4753	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGAD_chr16_31388335_31431505	1/1	t0001	404	373	95	56	170	16	34	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	t0002	404	1	1	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	t0003	404	1	0	0	1	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	t0004	404	1	0	0	1	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAE_chr17_3709628_3806188	1/1	t0001	264	298	72	58	112	14	40	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	t0002	264	4	0	0	4	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAL_chr16_30467742_30528185	1/1	t0001	1617	291	63	72	105	15	34	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0002	1617	7	7	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0003	1617	7	7	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0004	1617	5	5	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0005	1617	3	3	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0006	1617	2	2	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0007	1617	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0008	1617	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	t0009	1617	1	0	0	0	1	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAM_chr16_31254975_31337877	1/1	t0001	1261	76	6	19	32	4	13	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0002	1269	69	14	16	34	2	3	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0003	1261	38	15	11	2	2	8	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0004	1261	35	34	1	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877