JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGAM_chr16_31254975_31337877	0/0	t0005	1274	22	15	3	0	2	2	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0006	1274	1	0	1	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0007	1269	1	0	1	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0008	1269	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	t0009	1261	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAV_chr2_186585056_186685901	1/1	t0001	3893	134	39	25	45	6	17	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0002	3888	71	9	23	23	4	12	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0003	3891	53	12	13	16	4	8	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0004	3893	15	2	3	10	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0005	3895	5	5	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0006	3894	3	3	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0007	3891	3	2	1	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0008	3893	3	3	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0009	3888	2	0	0	2	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0010	3896	2	0	0	2	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0011	3893	2	2	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0012	3893	2	2	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0013	3891	2	0	0	2	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0014	3895	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0015	3895	1	0	1	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0016	3894	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0017	3895	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0018	3893	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0019	3888	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0020	3891	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0021	3888	1	0	0	0	0	1	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0022	3893	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0023	3893	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	t0024	3895	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAX_chr16_31350176_31387999	0/0	t0001	1171	92	6	17	54	3	12	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0002	1172	86	27	15	35	2	7	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	1/1	t0003	1172	84	17	20	19	5	21	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0004	1172	15	0	3	8	2	2	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0005	1172	13	13	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0006	1171	10	9	1	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0007	1172	9	1	8	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0008	1172	7	7	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0009	1175	5	5	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0010	1193	4	0	0	4	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0011	1170	3	2	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0012	1171	3	0	0	3	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0013	1171	3	3	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0014	1172	2	0	2	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0015	1171	2	0	0	2	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0016	1172	2	0	0	2	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0017	1171	2	2	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0018	1172	2	1	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0019	1171	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0020	1171	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0021	1172	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999