JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGAX_chr16_31350176_31387999	0/0	t0022	1194	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0023	1172	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	t0024	1172	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGB1BP1_chr2_9398475_9428528	0/0	t0001	3213	12	11	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/1	t0002	3327	6	0	3	0	2	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0003	3214	5	4	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0004	3383	4	0	2	0	0	2	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0005	3327	4	3	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0006	3439	4	0	0	4	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0007	3270	3	2	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0008	3270	3	3	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0009	3383	3	0	0	1	0	2	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0010	3383	2	2	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0011	3427	2	2	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0012	4335	2	0	0	0	2	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0013	3719	2	0	0	2	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0014	3499	2	0	0	2	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0015	3549	2	2	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0016	3662	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0017	3326	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0018	3430	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0019	3374	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0020	3322	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0021	3426	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0022	3322	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0023	3158	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0024	3214	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0025	3823	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0026	3607	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0027	3327	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0028	3439	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0029	3435	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0030	3328	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0031	3495	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0032	3215	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0033	3271	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0034	5511	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0035	3327	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0036	3771	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0037	3383	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0038	3999	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0039	3663	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0040	3271	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0041	3887	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0042	3719	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0043	3267	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0044	3711	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0045	3275	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0046	3493	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0047	3543	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528