Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD65_chr1_1413420_1426276	0/0	t0002	825	45	39	3	2	0	1	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	t0003	825	20	4	0	14	0	2	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	t0004	825	10	0	1	9	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	t0005	825	1	0	0	0	0	1	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	t0006	825	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	t0007	825	1	0	0	0	1	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	t0008	825	1	0	1	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD66_chr6_46741933_46764506	1/1	t0001	740	381	70	80	172	16	41	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	t0002	740	18	17	0	0	0	1	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	t0003	740	1	0	0	0	0	1	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	t0004	740	1	1	0	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	t0005	740	1	0	0	0	0	1	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD6_chr6_89428152_89638821	0/0	t0001	3189	138	30	22	70	6	10	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0002	3189	41	12	7	14	3	5	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/1	t0003	3189	28	8	6	3	0	10	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0004	3189	21	1	9	6	2	3	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	1/0	t0005	3185	20	9	5	0	3	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0006	3185	5	5	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0007	3189	4	4	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0008	3189	2	0	2	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0009	3189	1	0	1	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0010	3189	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0011	3189	1	0	0	0	0	1	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0012	3189	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0013	3189	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0014	3189	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0015	3189	1	0	0	0	0	1	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0016	3185	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0017	3189	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0018	3189	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	t0019	3189	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD7_chr7_118219704_118247732	1/0	t0001	549	301	74	44	139	11	32	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/1	t0002	548	97	15	18	53	3	7	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	t0003	549	6	4	2	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	t0004	549	1	1	0	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	t0005	548	1	0	0	0	0	1	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD9_chr14_102496767_102514776	0/0	t0001	5752	113	32	15	48	5	13	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	1/1	t0002	5752	73	15	14	27	4	11	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0003	5755	64	5	11	36	5	7	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0004	5753	16	2	8	5	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0005	5751	15	14	0	0	1	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0006	5751	13	1	1	11	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0007	5752	12	0	1	5	1	5	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0008	5759	5	0	0	5	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0009	5727	5	0	0	5	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0010	5751	4	2	1	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0011	5751	4	1	2	0	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0012	5740	4	0	0	3	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0013	5752	3	0	1	0	0	2	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0014	5754	3	0	3	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776