JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB1BP1_chr2_9398475_9428528	0/0	t0048	3327	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0049	3215	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0050	7653	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0051	3215	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0052	4270	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0053	4594	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0054	3823	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0055	3383	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0056	4163	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0057	4277	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0058	3943	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0059	3831	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0060	3723	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0061	3827	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0062	4275	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0063	3607	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0064	4559	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0065	3495	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0066	3546	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0067	4503	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0068	3611	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0069	3495	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0070	3439	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0071	3491	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0072	3667	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0073	4719	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0074	3887	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0075	3439	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0076	3383	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0077	3331	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0078	3495	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0079	4995	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0080	3719	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0081	3551	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0082	3873	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0083	3383	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0084	3331	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0085	3547	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0086	3327	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0087	3719	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0088	3275	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0089	3551	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0090	3555	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0091	3379	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0092	5679	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0093	3719	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0094	3439	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0095	3327	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0096	3831	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0097	3547	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528