JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB1BP1_chr2_9398475_9428528	0/0	t0098	3387	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0099	3271	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0100	3219	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0101	4779	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0102	3779	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0103	4051	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0104	4387	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0105	4878	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0106	4538	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0107	3663	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0108	4159	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0109	4671	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0110	3215	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0111	4555	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0112	3331	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0113	3607	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0114	3215	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0115	3439	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0116	3607	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0117	6382	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0118	3719	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0119	3719	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0120	3439	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0121	3603	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0122	4107	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0123	3719	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0124	3495	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0125	3715	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0126	4334	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0127	3215	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0128	6191	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0129	3995	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0130	3767	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0131	4654	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0132	3887	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0133	3663	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0134	3603	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	1/0	t0135	3551	1	0	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0136	4478	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0137	3831	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0138	3275	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0139	3322	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0140	4434	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0141	3831	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0142	3927	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0143	3607	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0144	4165	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0145	4503	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0146	3658	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0147	3659	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528