JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB1BP1_chr2_9398475_9428528	0/0	t0148	4215	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0149	3660	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0150	3275	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0151	3719	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0152	4167	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0153	3443	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0154	5903	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0155	4443	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0156	3663	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0157	3331	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0158	3327	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0159	3999	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0160	3707	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0161	3544	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0162	3555	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0163	4111	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0164	4199	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0165	3599	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0166	3658	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0167	3546	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0168	7601	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0169	7019	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0170	4889	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0171	4974	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0172	4783	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0173	4783	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0174	3663	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0175	4839	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0176	3761	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0177	4041	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0178	3821	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0179	3603	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0180	3327	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0181	4214	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0182	4773	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0183	3439	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0184	4399	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0185	4111	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0186	5479	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0187	4430	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0188	4559	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0189	5451	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0190	4211	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0191	3927	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0192	3331	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0193	3271	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0194	3383	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0195	3211	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0196	4727	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0197	3775	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528