JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB1BP1_chr2_9398475_9428528	0/0	t0198	3888	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0199	3719	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0200	3555	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0201	3551	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0202	5157	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0203	3438	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0204	3715	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0205	3551	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0206	4222	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0207	3276	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0208	3719	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0209	3383	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0210	5491	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0211	3383	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0212	4775	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0213	6291	1	0	0	0	1	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0214	3763	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0215	5215	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0216	3271	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0217	3383	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0218	3267	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0219	4503	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0220	5739	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0221	5915	1	0	0	0	0	1	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0222	5267	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0223	3103	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0224	4806	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0225	3863	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0226	4051	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0227	3781	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0228	4957	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0229	4261	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0230	4495	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0231	3719	1	0	0	1	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0232	3431	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0233	3327	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0234	3215	1	0	1	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP1_chr2_9398475_9428528	0/0	t0235	3943	1	1	0	0	0	0	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP2_chrX_71296750_71310371	1/1	t0001	237	290	72	57	116	11	32	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	t0002	236	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1_chr10_32895318_32963230	0/0	t0001	1339	196	14	32	115	8	27	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	1/0	t0002	1339	98	29	6	58	1	3	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0003	1338	55	1	16	21	5	12	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/1	t0004	1339	46	36	5	0	2	2	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0005	1335	7	5	2	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0006	1339	5	4	1	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0007	1339	5	0	0	5	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0008	1338	2	0	1	0	0	1	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0009	1339	2	0	0	2	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0010	1339	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230