JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB1_chr10_32895318_32963230	0/0	t0011	1122	1	0	0	0	0	1	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0012	1338	1	0	1	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0013	1338	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0014	1338	1	0	1	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0015	1339	1	1	0	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0016	1338	1	0	1	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	t0017	1339	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB2_chr21_44880953_44925899	1/0	t0001	498	245	40	50	130	8	16	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0002	498	75	11	23	22	4	15	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0003	498	68	1	6	40	6	15	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0004	498	40	37	3	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0005	497	7	6	1	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/1	t0006	498	2	0	1	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0007	498	2	0	0	0	0	2	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0008	498	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0009	498	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0010	498	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0011	498	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	t0012	498	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB3BP_chr1_63435770_63528225	1/1	t0001	427	363	84	67	170	8	32	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	t0002	427	7	6	1	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	t0003	427	3	0	0	3	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	t0004	427	1	0	0	1	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3_chr17_47248827_47318743	0/1	t0001	3576	99	32	21	32	3	10	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	1/0	t0002	3575	79	12	12	37	3	14	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0003	3575	39	2	10	21	0	6	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0004	3575	36	1	1	33	1	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0005	3576	36	1	2	28	1	4	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0006	3575	12	2	8	0	1	1	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0007	3575	10	1	1	7	0	1	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0008	3576	8	7	1	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0009	3575	7	7	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0010	3575	6	0	0	6	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0011	3574	4	3	1	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0012	3576	3	2	1	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0013	3577	3	0	1	2	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0014	3576	2	0	0	2	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0015	3575	2	0	1	0	1	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0016	3575	2	2	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0017	3577	2	0	0	2	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0018	3575	2	0	0	1	1	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0019	3576	2	0	2	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0020	3575	2	2	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0021	3576	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0022	3575	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0023	3575	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0024	3577	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0025	3575	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0026	3576	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	t0027	3576	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743