JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGB8_chr7_20325900_20420754	0/0	t0035	6662	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0036	6663	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0037	6664	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0038	6665	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0039	6661	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0040	6665	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0041	6666	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0042	6661	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0043	6662	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0044	6664	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0045	6663	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0046	6663	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0047	6664	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0048	6662	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0049	6664	1	0	0	0	1	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0050	6663	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0051	6663	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0052	6663	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0053	6664	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0054	6663	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0055	6664	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0056	6663	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0057	6664	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0058	6664	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0059	6664	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0060	6664	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0061	6666	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0062	6665	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0063	6665	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0064	6665	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0065	6664	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0066	6663	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0067	6663	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0068	6663	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0069	6665	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0070	6666	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0071	6665	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0072	6661	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0073	6661	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0074	6664	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0075	6665	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0076	6663	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0077	6664	1	0	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0078	6665	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	t0079	6664	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGBL1_chr13_101447675_101721446	0/1	t0001	952	271	66	51	110	9	34	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	t0002	952	27	15	7	4	1	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	1/0	t0003	952	4	3	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	t0004	952	2	0	0	2	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	t0005	952	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446