JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITGBL1_chr13_101447675_101721446	0/0	t0006	952	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITIH1_chr3_52772599_52797062	1/1	t0001	169	404	89	85	172	16	40	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	t0002	169	2	1	1	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH2_chr10_7698316_7754520	1/1	t0001	306	372	85	64	175	12	34	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	t0002	306	5	5	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	t0003	306	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	t0004	276	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	t0005	306	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH3_chr3_52789796_52813797	1/1	t0001	125	413	94	83	178	16	40	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	t0002	125	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH4_chr3_52807962_52835672	0/0	t0001	491	159	35	34	79	5	6	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	1/1	t0002	490	154	22	31	65	8	26	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0003	492	32	24	4	4	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0004	479	28	3	14	8	1	2	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0005	489	7	0	2	4	0	1	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0006	490	5	0	0	1	0	4	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0007	491	1	0	0	0	0	1	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0008	490	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0009	492	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0010	492	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	t0011	491	1	0	1	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH5_chr10_7554270_7671966	0/0	t0001	3886	209	26	46	95	10	32	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0002	3885	19	0	7	8	2	2	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0003	3885	11	7	2	0	0	2	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0004	3888	7	7	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0005	3884	6	2	0	2	0	2	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0006	3885	6	6	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0007	3886	5	5	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0008	3887	5	3	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0009	3884	4	0	0	4	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/1	t0010	3886	3	0	1	0	1	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0011	3885	3	0	0	3	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0012	3887	3	3	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0013	3887	2	0	0	2	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0014	3886	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0015	3886	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0016	3884	2	0	0	0	0	2	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0017	3886	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0018	3886	2	0	1	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0019	3887	2	0	0	1	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0020	3887	2	0	0	2	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0021	3888	2	1	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0022	3886	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0023	3886	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0024	3886	1	0	0	0	1	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0025	3885	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0026	3887	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0027	3885	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0028	3885	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0029	3886	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966