JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITIH5_chr10_7554270_7671966	0/0	t0030	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0031	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	1/0	t0032	3888	1	0	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0033	3883	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0034	3883	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0035	3884	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0036	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0037	3887	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0038	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0039	3885	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0040	3886	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0041	3883	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0042	3888	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0043	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0044	3883	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0045	3884	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0046	3886	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0047	3886	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0048	3889	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0049	3886	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0050	3888	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0051	3887	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0052	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0053	3884	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0054	3884	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0055	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0056	3888	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0057	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0058	3884	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0059	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0060	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0061	3886	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0062	3884	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0063	3887	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	t0064	3887	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH6_chrX_54743918_54803255	1/1	t0001	1023	263	46	54	123	11	27	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0002	1023	21	15	4	1	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0003	1023	2	0	0	0	0	2	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0004	1019	2	2	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0005	1023	2	2	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0006	1023	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0007	1022	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0008	1023	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0009	1024	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0010	1023	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	t0011	1023	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITK_chr5_157175840_157260185	0/0	t0001	2646	212	55	40	78	11	28	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	1/0	t0002	2646	58	1	5	44	0	7	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0003	2646	28	7	10	5	2	4	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0004	2646	9	6	3	0	0	0	copy fasta	ITK	chr5	157175840	157260185