Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD9_chr14_102496767_102514776	0/0	t0015	5744	3	1	1	0	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0016	5752	2	0	0	2	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0017	5751	2	0	0	0	0	2	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0018	5752	2	0	0	2	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0019	5752	2	1	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0020	5744	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0021	5773	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0022	5759	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0023	5760	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0024	5759	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0025	5759	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0026	5758	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0027	5762	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0028	5752	1	0	0	0	1	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0029	5752	1	0	0	0	1	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0030	5753	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0031	5752	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0032	5753	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0033	5752	1	0	0	0	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0034	5752	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0035	5753	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0036	5753	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0037	5751	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0038	5751	1	0	0	0	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0039	5752	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0040	5751	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0041	5752	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0042	5752	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0043	5752	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0044	5751	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0045	5752	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0046	5751	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0047	5753	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0048	5753	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0049	5755	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0050	5755	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0051	5755	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0052	5754	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0053	5755	1	0	1	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0054	5752	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0055	5751	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0056	5752	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0057	5748	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0058	5744	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0059	5737	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	t0060	5752	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKS1A_chr6_34884255_35096406	0/0	t0001	2946	86	10	18	48	1	9	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	1/1	t0002	2946	60	7	8	39	1	3	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0003	2946	40	1	5	32	0	2	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	t0004	2947	32	9	4	14	1	4	copy fasta	ANKS1A	chr6	34884255	35096406