JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITK_chr5_157175840_157260185	0/0	t0005	2646	6	6	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0006	2646	5	4	1	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0007	2646	4	4	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0008	2646	2	2	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0009	2646	2	2	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/1	t0010	2646	2	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0011	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0012	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0013	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0014	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0015	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0016	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0017	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0018	2646	1	0	0	0	1	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0019	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0020	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0021	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0022	2646	1	0	0	0	0	1	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0023	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0024	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0025	2646	1	0	1	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0026	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0027	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0028	2646	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0029	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	t0030	2646	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITLN1_chr1_160871540_160890180	1/1	t0001	251	404	89	60	197	16	40	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	t0002	251	16	7	0	8	0	1	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	t0003	251	3	0	0	3	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	t0004	251	3	0	0	3	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	t0005	251	1	0	0	1	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	t0006	251	1	0	0	0	0	1	copy fasta	ITLN1	chr1	160871540	160890180
ITLN2_chr1_160940025_160959809	1/1	t0001	184	468	87	86	225	18	50	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	t0002	184	8	8	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	t0003	184	3	3	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	t0004	184	1	0	0	1	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITM2A_chrX_79355384_79372334	0/0	t0001	828	83	1	13	64	0	5	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/1	t0002	826	81	10	9	57	2	2	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0003	826	47	9	14	8	7	9	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	1/0	t0004	825	38	14	16	0	1	6	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0005	825	33	4	4	14	3	8	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0006	827	32	29	2	0	0	1	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0007	827	11	10	1	0	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0008	827	2	0	2	0	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0009	825	2	0	0	2	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0010	825	1	0	0	1	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0011	826	1	1	0	0	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0012	826	1	1	0	0	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0013	825	1	0	0	0	0	1	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	t0014	824	1	1	0	0	0	0	copy fasta	ITM2A	chrX	79355384	79372334