JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITM2B_chr13_48228206_48275357	0/0	t0001	9289	119	8	34	65	3	9	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0002	9290	36	1	6	22	0	7	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0003	9291	20	14	3	0	1	2	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0004	9291	18	3	1	13	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0005	9290	16	0	1	14	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0006	9289	8	0	0	8	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0007	9289	8	8	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0008	9291	6	6	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	1/0	t0009	9289	6	0	1	0	1	3	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0010	9290	6	0	0	6	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0011	9291	5	5	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0012	9289	5	5	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/1	t0013	9289	5	0	3	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0014	9291	4	3	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0015	9281	4	4	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0016	9291	4	1	3	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0017	9285	4	4	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0018	9292	4	4	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0019	9283	3	3	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0020	9290	3	2	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0021	9290	3	0	3	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0022	9289	3	3	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0023	9289	3	1	1	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0024	9292	3	1	2	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0025	9292	3	0	0	2	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0026	9291	2	2	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0027	9291	2	2	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0028	9289	2	2	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0029	9291	2	0	0	1	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0030	9287	2	0	0	0	0	2	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0031	9291	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0032	9291	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0033	9291	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0034	9287	1	0	0	0	1	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0035	9289	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0036	9289	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0037	9289	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0038	9291	1	0	0	0	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0039	9281	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0040	9283	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0041	9290	1	0	0	0	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0042	9289	1	0	0	0	1	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0043	9283	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0044	9291	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0045	9291	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0046	9289	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0047	9291	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0048	9291	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0049	9289	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0050	9290	1	0	0	0	1	0	copy fasta	ITM2B	chr13	48228206	48275357