JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ITM2B_chr13_48228206_48275357	0/0	t0051	9291	1	0	0	0	0	1	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0052	9289	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0053	9290	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0054	9289	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0055	9292	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0056	9291	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0057	9291	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0058	9290	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	t0059	9285	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2C_chr2_230859942_230884248	1/0	t0001	1234	312	67	63	125	17	39	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0002	1234	43	7	11	16	1	8	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0003	1234	9	8	1	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0004	1234	8	7	1	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0005	1234	8	0	0	8	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0006	1234	6	0	2	4	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0007	1234	4	4	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0008	1234	2	2	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0009	1234	1	0	0	0	0	1	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/1	t0010	1234	1	0	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0011	1234	1	0	1	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0012	1234	1	1	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0013	1234	1	0	1	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	t0014	1234	1	0	0	1	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITPA_chr20_3204498_3228860	1/1	t0001	453	354	76	65	155	15	41	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	t0002	453	41	2	3	31	2	3	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	t0003	453	11	10	1	0	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	t0004	453	4	0	4	0	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	t0005	453	2	0	0	0	0	2	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	t0006	453	1	0	1	0	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	t0007	453	1	0	0	0	1	0	copy fasta	ITPA	chr20	3204498	3228860
ITPK1_chr14_92931914_93120925	0/0	t0001	4944	26	0	3	18	2	3	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0002	4944	19	8	6	3	1	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0003	4941	14	0	0	11	0	3	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0004	4944	14	5	2	3	0	4	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0005	4944	12	1	5	4	1	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0006	4944	7	0	1	6	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0007	4944	7	1	4	0	2	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0008	4944	7	0	7	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0009	4944	6	0	0	6	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0010	4944	5	5	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0011	4936	5	0	1	0	2	2	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0012	4944	5	5	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0013	4944	4	3	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0014	4944	4	4	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0015	4941	4	0	0	0	3	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0016	4944	4	0	4	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0017	4944	4	4	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/1	t0018	4944	3	0	1	0	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0019	4944	3	0	1	1	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	t0020	4944	3	0	1	0	2	0	copy fasta	ITPK1	chr14	92931914	93120925